Josh Dillon, Last Revised January 2022
This notebook examines an individual antenna's performance over a whole season. This notebook parses information from each nightly rtp_summarynotebook (as saved to .csvs) and builds a table describing antenna performance. It also reproduces per-antenna plots from each auto_metrics notebook pertinent to the specific antenna.
import os
from IPython.display import display, HTML
display(HTML("<style>.container { width:100% !important; }</style>"))
# If you want to run this notebook locally, copy the output of the next cell into the next line of this cell.
# antenna = "004"
# csv_folder = '/lustre/aoc/projects/hera/H5C/H5C_Notebooks/_rtp_summary_'
# auto_metrics_folder = '/lustre/aoc/projects/hera/H5C/H5C_Notebooks/auto_metrics_inspect'
# os.environ["ANTENNA"] = antenna
# os.environ["CSV_FOLDER"] = csv_folder
# os.environ["AUTO_METRICS_FOLDER"] = auto_metrics_folder
# Use environment variables to figure out path to the csvs and auto_metrics
antenna = str(int(os.environ["ANTENNA"]))
csv_folder = os.environ["CSV_FOLDER"]
auto_metrics_folder = os.environ["AUTO_METRICS_FOLDER"]
print(f'antenna = "{antenna}"')
print(f'csv_folder = "{csv_folder}"')
print(f'auto_metrics_folder = "{auto_metrics_folder}"')
antenna = "190" csv_folder = "/home/obs/src/H6C_Notebooks/_rtp_summary_" auto_metrics_folder = "/home/obs/src/H6C_Notebooks/auto_metrics_inspect"
display(HTML(f'<h1 style=font-size:50px><u>Antenna {antenna} Report</u><p></p></h1>'))
import numpy as np
import pandas as pd
pd.set_option('display.max_rows', 1000)
import glob
import re
from hera_notebook_templates.utils import status_colors, Antenna
# load csvs and auto_metrics htmls in reverse chronological order
csvs = sorted(glob.glob(os.path.join(csv_folder, 'rtp_summary_table*.csv')))[::-1]
print(f'Found {len(csvs)} csvs in {csv_folder}')
auto_metric_htmls = sorted(glob.glob(auto_metrics_folder + '/auto_metrics_inspect_*.html'))[::-1]
print(f'Found {len(auto_metric_htmls)} auto_metrics notebooks in {auto_metrics_folder}')
Found 13 csvs in /home/obs/src/H6C_Notebooks/_rtp_summary_ Found 12 auto_metrics notebooks in /home/obs/src/H6C_Notebooks/auto_metrics_inspect
# Per-season options
mean_round_modz_cut = 4
dead_cut = 0.4
crossed_cut = 0.0
def jd_to_summary_url(jd):
return f'https://htmlpreview.github.io/?https://github.com/HERA-Team/H6C_Notebooks/blob/main/_rtp_summary_/rtp_summary_{jd}.html'
def jd_to_auto_metrics_url(jd):
return f'https://htmlpreview.github.io/?https://github.com/HERA-Team/H6C_Notebooks/blob/main/auto_metrics_inspect/auto_metrics_inspect_{jd}.html'
this_antenna = None
jds = []
# parse information about antennas and nodes
for csv in csvs:
df = pd.read_csv(csv)
for n in range(len(df)):
# Add this day to the antenna
row = df.loc[n]
if isinstance(row['Ant'], str) and '<a href' in row['Ant']:
antnum = int(row['Ant'].split('</a>')[0].split('>')[-1]) # it's a link, extract antnum
else:
antnum = int(row['Ant'])
if antnum != int(antenna):
continue
if np.issubdtype(type(row['Node']), np.integer):
row['Node'] = str(row['Node'])
if type(row['Node']) == str and row['Node'].isnumeric():
row['Node'] = 'N' + ('0' if len(row['Node']) == 1 else '') + row['Node']
if this_antenna is None:
this_antenna = Antenna(row['Ant'], row['Node'])
jd = [int(s) for s in re.split('_|\.', csv) if s.isdigit()][-1]
jds.append(jd)
this_antenna.add_day(jd, row)
break
# build dataframe
to_show = {'JDs': [f'<a href="{jd_to_summary_url(jd)}" target="_blank">{jd}</a>' for jd in jds]}
to_show['A Priori Status'] = [this_antenna.statuses[jd] for jd in jds]
df = pd.DataFrame(to_show)
# create bar chart columns for flagging percentages:
bar_cols = {}
bar_cols['Auto Metrics Flags'] = [this_antenna.auto_flags[jd] for jd in jds]
bar_cols[f'Dead Fraction in Ant Metrics (Jee)'] = [this_antenna.dead_flags_Jee[jd] for jd in jds]
bar_cols[f'Dead Fraction in Ant Metrics (Jnn)'] = [this_antenna.dead_flags_Jnn[jd] for jd in jds]
bar_cols['Crossed Fraction in Ant Metrics'] = [this_antenna.crossed_flags[jd] for jd in jds]
bar_cols['Flag Fraction Before Redcal'] = [this_antenna.flags_before_redcal[jd] for jd in jds]
bar_cols['Flagged By Redcal chi^2 Fraction'] = [this_antenna.redcal_flags[jd] for jd in jds]
for col in bar_cols:
df[col] = bar_cols[col]
z_score_cols = {}
z_score_cols['ee Shape Modified Z-Score'] = [this_antenna.ee_shape_zs[jd] for jd in jds]
z_score_cols['nn Shape Modified Z-Score'] = [this_antenna.nn_shape_zs[jd] for jd in jds]
z_score_cols['ee Power Modified Z-Score'] = [this_antenna.ee_power_zs[jd] for jd in jds]
z_score_cols['nn Power Modified Z-Score'] = [this_antenna.nn_power_zs[jd] for jd in jds]
z_score_cols['ee Temporal Variability Modified Z-Score'] = [this_antenna.ee_temp_var_zs[jd] for jd in jds]
z_score_cols['nn Temporal Variability Modified Z-Score'] = [this_antenna.nn_temp_var_zs[jd] for jd in jds]
z_score_cols['ee Temporal Discontinuties Modified Z-Score'] = [this_antenna.ee_temp_discon_zs[jd] for jd in jds]
z_score_cols['nn Temporal Discontinuties Modified Z-Score'] = [this_antenna.nn_temp_discon_zs[jd] for jd in jds]
for col in z_score_cols:
df[col] = z_score_cols[col]
ant_metrics_cols = {}
ant_metrics_cols['Average Dead Ant Metric (Jee)'] = [this_antenna.Jee_dead_metrics[jd] for jd in jds]
ant_metrics_cols['Average Dead Ant Metric (Jnn)'] = [this_antenna.Jnn_dead_metrics[jd] for jd in jds]
ant_metrics_cols['Average Crossed Ant Metric'] = [this_antenna.crossed_metrics[jd] for jd in jds]
for col in ant_metrics_cols:
df[col] = ant_metrics_cols[col]
redcal_cols = {}
redcal_cols['Median chi^2 Per Antenna (Jee)'] = [this_antenna.Jee_chisqs[jd] for jd in jds]
redcal_cols['Median chi^2 Per Antenna (Jnn)'] = [this_antenna.Jnn_chisqs[jd] for jd in jds]
for col in redcal_cols:
df[col] = redcal_cols[col]
# style dataframe
table = df.style.hide_index()\
.applymap(lambda val: f'background-color: {status_colors[val]}' if val in status_colors else '', subset=['A Priori Status']) \
.background_gradient(cmap='viridis', vmax=mean_round_modz_cut * 3, vmin=0, axis=None, subset=list(z_score_cols.keys())) \
.background_gradient(cmap='bwr_r', vmin=dead_cut-.25, vmax=dead_cut+.25, axis=0, subset=list([col for col in ant_metrics_cols if 'dead' in col.lower()])) \
.background_gradient(cmap='bwr_r', vmin=crossed_cut-.25, vmax=crossed_cut+.25, axis=0, subset=list([col for col in ant_metrics_cols if 'crossed' in col.lower()])) \
.background_gradient(cmap='plasma', vmax=4, vmin=1, axis=None, subset=list(redcal_cols.keys())) \
.applymap(lambda val: 'font-weight: bold' if val < dead_cut else '', subset=list([col for col in ant_metrics_cols if 'dead' in col.lower()])) \
.applymap(lambda val: 'font-weight: bold' if val < crossed_cut else '', subset=list([col for col in ant_metrics_cols if 'crossed' in col.lower()])) \
.applymap(lambda val: 'font-weight: bold' if val > mean_round_modz_cut else '', subset=list(z_score_cols.keys())) \
.applymap(lambda val: 'color: red' if val > mean_round_modz_cut else '', subset=list(z_score_cols.keys())) \
.bar(subset=list(bar_cols.keys()), vmin=0, vmax=1) \
.format({col: '{:,.4f}'.format for col in z_score_cols}) \
.format({col: '{:,.4f}'.format for col in ant_metrics_cols}) \
.format('{:,.2%}', na_rep='-', subset=list(bar_cols.keys())) \
.set_table_styles([dict(selector="th",props=[('max-width', f'70pt')])])
This table reproduces each night's row for this antenna from the RTP Summary notebooks. For more info on the columns, see those notebooks, linked in the JD column.
display(HTML(f'<h2>Antenna {antenna}, Node {this_antenna.node}:</h2>'))
HTML(table.render(render_links=True, escape=False))
| JDs | A Priori Status | Auto Metrics Flags | Dead Fraction in Ant Metrics (Jee) | Dead Fraction in Ant Metrics (Jnn) | Crossed Fraction in Ant Metrics | Flag Fraction Before Redcal | Flagged By Redcal chi^2 Fraction | ee Shape Modified Z-Score | nn Shape Modified Z-Score | ee Power Modified Z-Score | nn Power Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Discontinuties Modified Z-Score | nn Temporal Discontinuties Modified Z-Score | Average Dead Ant Metric (Jee) | Average Dead Ant Metric (Jnn) | Average Crossed Ant Metric | Median chi^2 Per Antenna (Jee) | Median chi^2 Per Antenna (Jnn) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2459826 | digital_ok | 100.00% | 0.00% | 100.00% | 0.00% | 100.00% | 0.00% | 58.927464 | 29.204004 | 4.756377 | 41.312234 | 22.050304 | 45.246022 | 2.495538 | 8.734999 | 0.6491 | 0.0449 | 0.4245 | 0.000000 | 0.000000 |
| 2459825 | digital_ok | 100.00% | 0.00% | 100.00% | 0.00% | 100.00% | 0.00% | 57.356112 | 32.073902 | 2.860385 | 33.203276 | 23.758611 | 30.046612 | 53.663661 | 4.426345 | 0.6483 | 0.0415 | 0.3595 | 0.000000 | 0.000000 |
| 2459824 | digital_ok | 100.00% | 16.03% | 100.00% | 0.00% | 100.00% | 0.00% | 63.350169 | 22.752909 | 3.658320 | 26.990515 | 13.670164 | 23.334840 | 13.920609 | 9.366384 | 0.4889 | 0.0402 | 0.2518 | 0.000000 | 0.000000 |
| 2459823 | digital_ok | 100.00% | 0.00% | 100.00% | 0.00% | 100.00% | 0.00% | 29.313380 | 27.076991 | 2.332616 | 48.790199 | 21.763454 | 36.047252 | 65.020554 | 32.204252 | 0.6475 | 0.0406 | 0.3473 | 0.000000 | 0.000000 |
| 2459822 | digital_ok | 100.00% | 0.00% | 100.00% | 0.00% | 100.00% | 0.00% | 33.510730 | 29.472632 | 2.131387 | 44.896870 | 9.692739 | 29.611515 | 63.453638 | 1.325346 | 0.6991 | 0.0444 | 0.3917 | 0.000000 | 0.000000 |
| 2459821 | digital_ok | 100.00% | 0.00% | 100.00% | 0.00% | 100.00% | 0.00% | 34.559561 | 31.040336 | 1.951426 | 45.739592 | 9.330736 | 27.687229 | 32.528138 | 1.300725 | 0.6824 | 0.0426 | 0.4394 | 5.545904 | 1.719189 |
| 2459820 | digital_ok | 100.00% | 8.06% | 100.00% | 0.00% | 100.00% | 0.00% | 77.242125 | 29.532492 | 5.423476 | 37.361485 | 36.876631 | 69.397207 | 16.350442 | 5.854430 | 0.5731 | 0.0501 | 0.3777 | 0.000000 | 0.000000 |
| 2459817 | digital_ok | 100.00% | 0.00% | 100.00% | 0.00% | 100.00% | 0.00% | 42.581791 | 26.804295 | 2.892031 | 44.383923 | 18.261230 | 36.861417 | 26.248594 | 4.612267 | 0.6781 | 0.0470 | 0.4618 | 0.000000 | 0.000000 |
| 2459816 | digital_ok | 100.00% | 0.00% | 100.00% | 0.00% | 100.00% | 0.00% | 43.926725 | 23.350212 | 3.278840 | 45.250507 | 24.135977 | 45.365555 | 31.022669 | 9.114476 | 0.7217 | 0.0452 | 0.5604 | 2.595323 | 0.945403 |
| 2459815 | digital_ok | 100.00% | 0.00% | 100.00% | 0.00% | 100.00% | 0.00% | 41.071773 | 25.125147 | 3.929624 | 48.688937 | 19.088373 | 48.155475 | 12.763033 | 13.215234 | 0.6331 | 0.0415 | 0.4564 | 2.466737 | 0.969552 |
| 2459814 | digital_ok | 0.00% | - | - | - | - | - | nan | nan | nan | nan | nan | nan | nan | nan | nan | nan | nan | nan | nan |
| 2459813 | digital_ok | 100.00% | 100.00% | 100.00% | 0.00% | 100.00% | 0.00% | nan | nan | inf | inf | nan | nan | nan | nan | nan | nan | nan | 0.000000 | 0.000000 |
auto_metrics notebooks.¶htmls_to_display = []
for am_html in auto_metric_htmls:
html_to_display = ''
# read html into a list of lines
with open(am_html) as f:
lines = f.readlines()
# find section with this antenna's metric plots and add to html_to_display
jd = [int(s) for s in re.split('_|\.', am_html) if s.isdigit()][-1]
try:
section_start_line = lines.index(f'<h2>Antenna {antenna}: {jd}</h2>\n')
except ValueError:
continue
html_to_display += lines[section_start_line].replace(str(jd), f'<a href="{jd_to_auto_metrics_url(jd)}" target="_blank">{jd}</a>')
for line in lines[section_start_line + 1:]:
html_to_display += line
if '<hr' in line:
htmls_to_display.append(html_to_display)
break
These figures are reproduced from auto_metrics notebooks. For more info on the specific plots and metrics, see those notebooks (linked at the JD). The most recent 100 days (at most) are shown.
for i, html_to_display in enumerate(htmls_to_display):
if i == 100:
break
display(HTML(html_to_display))
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | nn Shape Modified Z-Score | ee Shape Modified Z-Score | nn Power Modified Z-Score | ee Power Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Discontinuties Modified Z-Score | ee Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190 | N15 | digital_ok | ee Shape | 58.927464 | 29.204004 | 58.927464 | 41.312234 | 4.756377 | 45.246022 | 22.050304 | 8.734999 | 2.495538 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | nn Shape Modified Z-Score | ee Shape Modified Z-Score | nn Power Modified Z-Score | ee Power Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Discontinuties Modified Z-Score | ee Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190 | N15 | digital_ok | ee Shape | 57.356112 | 32.073902 | 57.356112 | 33.203276 | 2.860385 | 30.046612 | 23.758611 | 4.426345 | 53.663661 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | ee Shape Modified Z-Score | nn Shape Modified Z-Score | ee Power Modified Z-Score | nn Power Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Discontinuties Modified Z-Score | nn Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190 | N15 | digital_ok | ee Shape | 63.350169 | 63.350169 | 22.752909 | 3.658320 | 26.990515 | 13.670164 | 23.334840 | 13.920609 | 9.366384 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | nn Shape Modified Z-Score | ee Shape Modified Z-Score | nn Power Modified Z-Score | ee Power Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Discontinuties Modified Z-Score | ee Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190 | N15 | digital_ok | ee Temporal Discontinuties | 65.020554 | 27.076991 | 29.313380 | 48.790199 | 2.332616 | 36.047252 | 21.763454 | 32.204252 | 65.020554 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | ee Shape Modified Z-Score | nn Shape Modified Z-Score | ee Power Modified Z-Score | nn Power Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Discontinuties Modified Z-Score | nn Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190 | N15 | digital_ok | ee Temporal Discontinuties | 63.453638 | 33.510730 | 29.472632 | 2.131387 | 44.896870 | 9.692739 | 29.611515 | 63.453638 | 1.325346 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | nn Shape Modified Z-Score | ee Shape Modified Z-Score | nn Power Modified Z-Score | ee Power Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Discontinuties Modified Z-Score | ee Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190 | N15 | digital_ok | nn Power | 45.739592 | 31.040336 | 34.559561 | 45.739592 | 1.951426 | 27.687229 | 9.330736 | 1.300725 | 32.528138 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | ee Shape Modified Z-Score | nn Shape Modified Z-Score | ee Power Modified Z-Score | nn Power Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Discontinuties Modified Z-Score | nn Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190 | N15 | digital_ok | ee Shape | 77.242125 | 77.242125 | 29.532492 | 5.423476 | 37.361485 | 36.876631 | 69.397207 | 16.350442 | 5.854430 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | ee Shape Modified Z-Score | nn Shape Modified Z-Score | ee Power Modified Z-Score | nn Power Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Discontinuties Modified Z-Score | nn Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190 | N15 | digital_ok | nn Power | 44.383923 | 42.581791 | 26.804295 | 2.892031 | 44.383923 | 18.261230 | 36.861417 | 26.248594 | 4.612267 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | nn Shape Modified Z-Score | ee Shape Modified Z-Score | nn Power Modified Z-Score | ee Power Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Discontinuties Modified Z-Score | ee Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190 | N15 | digital_ok | nn Temporal Variability | 45.365555 | 23.350212 | 43.926725 | 45.250507 | 3.278840 | 45.365555 | 24.135977 | 9.114476 | 31.022669 |
| Ant | Node | A Priori Status | Worst Metric | Worst Modified Z-Score | nn Shape Modified Z-Score | ee Shape Modified Z-Score | nn Power Modified Z-Score | ee Power Modified Z-Score | nn Temporal Variability Modified Z-Score | ee Temporal Variability Modified Z-Score | nn Temporal Discontinuties Modified Z-Score | ee Temporal Discontinuties Modified Z-Score |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190 | N15 | digital_ok | nn Power | 48.688937 | 25.125147 | 41.071773 | 48.688937 | 3.929624 | 48.155475 | 19.088373 | 13.215234 | 12.763033 |